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Antimicrobial peptides

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  Antimicrobial Peptides : 1. Introduction to AMPs : ★AMPs are small, naturally occurring proteins (typically 10–100 amino acids) that play a crucial role in innate immunity. ★They exhibit broad-spectrum activity against bacteria, fungi, viruses, and even cancer cells. ★Common examples: Defensins, Cathelicidins, Magainins, LL-37. 2. Sources of AMPs : Natural Sources: Animals : Skin, epithelial cells, neutrophils (e.g., defensins from humans). Plants : Thionins, defensins. Microorganisms : Bacteriocins from bacteria. Marine organisms : Tunicates, sponges, and mollusks. Synthetic Sources: Designed based on known AMP structures or generated through bioinformatics tools. 3. Methods of Production A. Chemical Synthesis ★Solid Phase Peptide Synthesis (SPPS): ★Uses stepwise addition of amino acids on a resin. ★Suitable for peptides <50 amino acids. ★High purity but expensive and less efficient for long peptides. Advantages: >High purity. >Incorporation of modified amino acids. Dis...

Bateriocin

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Bacteriocins: 1. Introduction : ★ Bacteriocins are antimicrobial peptides produced by bacteria that inhibit the growth of similar or closely related bacterial strains. ★ They are ribosomally synthesized and can be used as natural preservatives and alternatives to antibiotics. 2. Classification of Bacteriocins : Based on structure and function: ★ Class I (Lantibiotics): Contain unusual amino acids (e.g., nisin). ★ Class II: Small, heat-stable peptides (e.g., pediocin). ★ Class III: Large, heat-labile proteins. ★ Class IV: Complex proteins with lipid or carbohydrate moieties. 3. Production of Bacteriocins 3.1. Producing Organisms > Common producers: Lactic acid bacteria (LAB) such as Lactobacillus, Pediococcus, Lactococcus, Enterococcus. 3.2. Genes and Regulation > Genes responsible for: > Bacteriocin production >Immunity proteins (protect the producer) > Transport and secretion >Often found on plasmids or chromosomal DNA. 3.3. Production Conditions > pH: Optimal aro...

Types of probiotics

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Types of Probiotics : Probiotics are live microorganisms that, when administered in adequate amounts, confer a health benefit on the host. They are most commonly from the Lactobacillus and Bifidobacterium genera but include other types as well. Classification of Probiotics : Probiotics can be classified based on: 1. Microbial type (bacteria or yeast) 2. Genus and species. 3. Form (single strain, multi-strain, or synbiotic) 1 . Bacterial Probiotics a. Lactobacillus species > Most widely used probiotics > Commonly found in the gut, mouth, and fermented foods Examples: Lactobacillus acidophilus – improves lactose digestion, reduces diarrhea Lactobacillus rhamnosus – prevents antibiotic-associated diarrhea Lactobacillus casei – supports immune function Lactobacillus plantarum – anti-inflammatory, antioxidant properties Lactobacillus reuteri – helps treat colic and dental health b. Bifidobacterium species: > Predominant in infants and colon > Help in immune regulation and dige...

Functions of endogenous microflora

Functions of Endogenous Microflora : Endogenous microflora are the microorganisms that naturally inhabit various sites of the human body such as the skin, gastrointestinal tract, respiratory tract, and genitourinary tract. They play essential roles in health and disease. 1 . Nutritional Functions Synthesis of vitamins: Gut flora synthesize essential vitamins, especially vitamin K, biotin (B7), folic acid, and vitamin B12. Fermentation of indigestible substances: They ferment dietary fibers and undigested carbohydrates into short-chain fatty acids (SCFAs) like acetate, propionate, and butyrate, which nourish colonocytes and regulate metabolism. Amino acid metabolism: Some gut microbes help in the metabolism of amino acids and contribute to nitrogen balance. 2 . Protective (Barrier) Functions Colonization resistance: Endogenous microflora occupy niches and consume nutrients, preventing pathogenic microbes from establishing. Production of antimicrobial substances: Certain species produce ...

Lactic acid bacteria

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Lactic Acid Bacteria (LAB):  1.Introduction : Lactic Acid Bacteria (LAB) are a group of Gram-positive, non-spore forming, aerotolerant anaerobes, typically rod- or cocci-shaped. They produce lactic acid as the major end product of carbohydrate fermentation. Found in dairy products, fermented foods, plant surfaces, and in the gastrointestinal tracts of humans and animals. 2 . Characteristics : Gram-positive Catalase-negative (do not produce catalase enzyme) Non-motile  Facultative anaerobes or microaerophilic Tolerate acidic environments (pH 4.0–6.5) Ferment sugars primarily into lactic acid (either homofermentative or heterofermentative) 3. Classification : Based on Fermentation Pathways: Homofermentative LAB: produce mainly lactic acid (e.g., Lactococcus, Streptococcus) Heterofermentative LAB: produce lactic acid, ethanol/acetic acid, and CO₂ (e.g., Leuconostoc, Weissella) Genera in LAB Group: Lactobacillus (now split into several genera) Lactococcus Leuconostoc...

Application of vermicomposting in agriculture and horticulture practices

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Application of Vermicomposting in Agriculture and Horticulture Practices : 1. Introduction to Vermicomposting : Vermicomposting is the process of using earthworms to decompose organic waste materials, turning them into nutrient-rich compost known as vermicast. This process helps recycle organic waste while enhancing soil fertility and structure. Key components of Vermicomposting: Earthworms : Primarily Eisenia fetida and Lumbricus rubellus are used. Organic waste : Kitchen scraps, farm residues, animal manure, and other biodegradable materials. Vermicast : The end product, rich in nutrients like nitrogen, phosphorus, potassium, and trace elements, ideal for soil amendment. 2. Benefits of Vermicomposting in Agriculture : The application of vermicomposting in agriculture offers numerous advantages, including: Soil Fertility Improvement: Vermicompost is rich in nutrients that help replenish soil fertility, enhancing crop yields. It improves the cation exchange capacity (CEC), enabling b...

Earthworms

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Earthworms : 1. Lumbricus terrestris (Common Earthworm) Description : This is the classic earthworm, often referred to as the "nightcrawler." It has a segmented body, typically reddish-brown to purple, and can grow up to 14 inches long. Habitat : Found in gardens, forests, and agricultural fields. Role : Known for its ability to aerate soil and create deep burrows, improving water infiltration and soil structure.                   2. Eisenia fetida (Red Wiggler) Description : This species is smaller, usually around 3-4 inches long, and is reddish in color. It's known for its active composting capabilities. Habitat : Commonly found in decaying organic matter, manure piles, or compost heaps. Role : Excellent for vermiculture (worm farming) and composting, as it breaks down organic waste into nutrient-rich humus. 3 . Aporrectodea caliginosa (Grey Worm) Description : A common earthworm found in temperate regions, it...